Research Article
Agus Limanto
Agus Limanto
Department
of Biochemistry, Krida Wacana Christian University (UKRIDA), Jakarta, Indonesia.
Adelina Simamora
Adelina Simamora
Department
of Biochemistry, Krida Wacana Christian University (UKRIDA), Jakarta, Indonesia.
Kris Herawan Timotius
Kris Herawan Timotius
Corresponding Author
Department
of Biochemistry, Krida Wacana Christian University (UKRIDA), Jakarta, Indonesia.
E-mail:
kh_timotius@ukrida.ac.id
Received: 2023-03-08 | Revised:2023-04-13 | Accepted: 2023-04-15 | Published: 2023-05-23
Pages: 21-31
DOI: https://doi.org/10.56717/jpp.2023.v02i01.014
Abstract
After
curcuminoids, xanthorrhizol is the second primary bioactive compound from
Curcuma xanthorrhiza. Traditionally, the rhizome of Curcuma xanthorriza is
well-known for its appetite stimulation. However, the mechanism of appetite
stimulation is still unclear, particularly its interaction with the
appetite-related ghrelin system. Therefore, understanding interactive molecular
modulations of xanthorrhizol with ghrelin, GOAT (ghrelin-O-acyl transferase),
and ghrelin receptor (GHS-R: growth hormone secretagogue receptor is essential.
Xanthorrhizol, an appetite stimulant, may interact with ghrelin, GOAT, and
GHS-R. Herein, this study aimed to do in silico analysis to hypothetically
predict the molecular interaction of xanthorrhizol with ghrelin, ghrelin-O-acyl
transferase (GOAT), and growth hormone secretagogue receptor (GHS-R). Docking
analysis was conducted to understand the interactive molecular patterns of
xanthorrhizol, ghrelin, GOAT, and GHS-R. The docking studies showed that the
molecular interaction of xanthorrhizol is with Arg10 of ghrelin and not with
Ser2, which is essential for the linkage of octanoic acid. The molecular
interaction of xanthorrhizol with GOAT is in the active sites of either
deacylated ghrelin or octanoic acid. Therefore, xanthorrhizol is a
competitive inhibitor of GOAT. It inhibits GOAT activity. Xanthorrhizol
interacts with GHS-R in its small cavity II. Itnis still unclear whether this
interaction is agonist or antagonist. This in silico analysis showed that
xanthorrhizol is probably not a stimulating appetite natural drug via
stimulating GHS-R signaling.
Abstract Keywords
Appetite stimulant, Curcuma
xanthorrhiza, enzyme modulation, hunger hormone, temulawak
1. Introduction
Xanthorrhizol (XNT) (2-methyl-5-[(2R)-6-methylhept-5-en-2-yl] phenol) is a bisabolane-type sesquiterpenoid (Fig. 1). It can be extracted from the rhizome of Curcuma xanthorrhiza (local name: temulawak). The rhizome is an essential component of Indonesian traditional medicine (local name:Jamu) and is extensively utilized as a medicinal and nutritional plant. Traditionally, it is used to treat diseases like lack of appetite, children's fever, stomach and liver disorders, constipation, bloody diarrhea, dysentery, arthritis, hypotriglyceridaemia [1], hemorrhoids, and rheumatism [2]. It also has various bioactivities, like antioxidant, anti-inflammatory, anticancer, antidiabetic, antihypertensive, antiplatelet, antimicrobial, skincare, and nephron-hepatoprotective properties [1-4]. Our body has appetite-related hormones (orexigenic hormones), like ghrelin. As an orexigenic hormone, ghrelin (acylated ghrelin, AG) regulates homeostatic and reward-related feeding behavior. This acylated ghrelin comes from the acylation of ghrelin from des acyl ghrelin (DAG). Ghrelin O-acyl transferase (GOAT), a gut enzyme, catalyzes the acylation of DAG [5]. In most cases, AG carries the octanoyl group in its third amino acid, serine (Ser2) [6]. Ghrelin impacts hunger and metabolic regulation by binding the ghrelin receptor (GHS-R) for signal activation [7]. By signal activation of GHS-R, GHS-R can regulate energy homeostasis and body weight. Ghrelin activation to GHS-R can directly stimulate appetite and hunger signaling [7]. GHS-Rs are most highly expressed in the hypothalamus, distinctively the ventromedial nucleus and arcuate nuclei. However, expression of GHS-Rs also happens in other areas of the brain, including the hippocampus, substantia nigra, and ventral tegmental area. Outside the central nervous system, GHS-Rs also exist in the heart, liver, and skeletal muscle [6].
To understand the relationship between ghrelin and appetite-related behavior, we must know the structures and functions of ghrelin (AG), DAG, GOAT, and GHS-R. Together is recognized as a Ghrelin/GOAT/GHS-R1a system (G3S). Specifically, G3S is essential in energy homeostasis that signals appetite and hunger [7].
Figure 1. Chemical structure of Xanthorrhizol (PubChem)
2. Materials and methods
Can XNZ improve appetite behavior by interacting with Ghrelin, GOAT, and GHS-R? What are the molecular interactions between XNZ with Ghrelin, GOAT, and GHS-R? Can XNZ influence the activity of GOAT and GHS-R signaling? and finally, can XNZ modulate appetite behavior through its Interaction with GOAT and GHS-R?
We hypothesized that the XNT has molecular interaction with Ghrelin and GOAT. In addition, XNZ has strong interaction in the active or allosteric sites of GOAT and GHS-R. Moreover, XNZ is an agonist of
GHS-R.
Receptors | : Desacyl Ghrelin (DAG), GOAT and GHS-R |
Endogenous ligands of GOAT | : Desacyl Ghrelin (DAG) and o-octanoic acid |
Endogenous ligand of GHS-R | : Ghrelin (acyl ghrelin, AG) |
Exogenous ligands | : Xanthorrhizol |
3. Results and Discussion
3.1. Octanoylation/Acylation process by GOAT
3.1.1. General characteristics of ghrelin
Ghrelin is an unusual peptide stomach hormone that is consisted of 28 amino acid residues. Its desacyl form, DAG, undergoes acylation or octanoylation of its third amino acid or Ser2. This acylated ghrelin (AG) is essential for ghrelin's activity to signal its receptor, named GHS-R (Fig. 2). [8] GOAT catalyzes DAG octanoylation [7]. The produced ghrelin acts as an endogenous ligand of GHS-R [8]. Therefore, DAG's acylation or octanoylation is essential for releasing ghrelin-induced growth hormone from the pituitary that stimulates appetite [9]. Ghrelin is considered the only peripheral hormone to transmit satiety or appetite signals. Nevertheless, ghrelin has additional physiological functions, like the stimulation of growth hormone release and accumulation of fat (obesity) (Fig. 2) [8, 10].
Figure 2. The function of ghrelin as a controller of homeostatic and hedonic feeding
Ghrelin is one of three hormone peptides encoded by the same preproghrelin gene. The other two hormone peptides are DAG and obestatin (Fig. 3). They modulate appetite, adipogenesis, glucose metabolism, immunity, sleep, anxiety, stress, and regulation of feeding-stimulated gastroduodenal motility. The stomach may regulate gastrointestinal motility via AG, DAG, and obestatin [11]. Even ghrelin is produced in the stomach, but its activities exert in the central nervous system by crossing the BBB. The produced ghrelin can stimulate the secretion of growth hormone (GH).
Figure 3. Three hormone peptides from a single gene
Therefore, ghrelin is thought to directly affect neurons involved in feeding via GH secretion by activated GHS-R (ghrelin receptor). Several gastrointestinal hormones, including ghreline, can transmit signals to the brain via the vagal afferent system. Vagotomy abolishes or attenuates GH secretion and the ghrelin's action on feeding. The vagal afferent system can convey the ghrelin's signals for feeding and GH secretion to the brain [12]. Blood-brain barrier (BBB) controls the entry of ghrelin, into the brain. Once ghrelin is present in the brain, it can activate the hypothalamus for regulating food intake, in the hippocampus for regulating neurogenesis, and in the olfactory bulb for regulating food-seeking behavior [13].
A preproghrelin gene encodes three peptides, namely ghrelin (or acyl ghrelin; AG), des-acyl ghrelin (DAG), and obestatin. Although DAG is considered as a degradation product of AG, DAG is considered as a separate hormone that has its own receptor and also can interact with AG at its receptor. Actually, DAG is a functional inhibitor of AG [14].
AG, DAG, and obestatin are both active hormones [15]. They are derived from a common prohormone, preproghrelin [16]. Ghrelin has orexigenic , but DAG and obestatin have anorexigenic properties. Ghrelin is produced mainly in the stomach and is an endogenous ligand of GHS-R located in the brain. The ghrelin levels in plasma strictly depend on recent food intake. Therefore, it is essential in appetite and meal initiation [17]. While ghrelin activates GHS-R, DAG does not [18]. Ghrelin can activate the pituitary and hypothalamus in stimulating appetite and adiposity and releasing growth hormone through its activation of GHS-R-1a. However, DAG, the unacylated ghrelin form, does not bind GHS-R-1a and is devoid of endocrine activity. But in plasma, DAG is more abundant than ghrelin [19].
3.1.2.General characteristic of Ghrelin O-acyltransferase (GOAT)
The only peptide known to undergo octanoylation is ghrelin. This octanylation is catalyzed by ghrelin O-acyltransferase (GOAT). GOAT is able to attach octanoate to DAG, and then produce AG, [20]. GOAT is expressed mainly in the gastrointestinal (GI) tract [21], is secreted by stomach X/A-like cells, and plays a role in appetite and metabolism [22]. DAG in the blood can cross BBB but it cannot bind to GHS-R1a. AG, but not DAG, can upregulate the GOAT expression [23]. The presence of GOAT in the hippocampus is essential for acylating DAG locally. The expression of GHS-R1a may be related to the synthesis of GOAT in the hippocampus [24].
3.1.3. Octanoylation process
GOAT is the only recognized enzyme that can catalyze the acyl modification of DAG that results in acylated ghrelin (AG). GOAT modifies the third amino acid serine (Ser2), not the other DAG peptides' residues. DAG and n-octanoic acids are substrates and ligands, respectively, for GOAT [25]. Octanoyl acyl donor should be supplied externally. Additionally, a four-amino acid peptide derived from the N-terminal sequence of ghrelin constitutes the core motif for substrate recognition by GOAT [26]. GOAT esterifies an n-octanoic acid to DAG, resulting in acylated ghrelin (AG) that can bind and activate the GHS-R (Fig. 2) [27, 28].
Ghrelin has a vital role in regulating glucose metabolism. GOAT can modify ghrelin into its active form [6, 29-31]. Its activity is associated with hedonic feeding behavior that is mediated by forebrain orexin signaling. The GOAT-ghrelin system is essential in mediating food motivation and hedonic feeding [5].
Activation or inhibition of GOAT depends on the physiologic situation. The fasting and satiation conditions can activate GOAT. For the GOAT’s activity, octanoic acid is needed as its substrate. GOAT can use octanoic acid either from diet-derived or adipose-fatty acids. Dietary fatty acids are probably a primary source of octanoate available in the stomach. However, there is a possibility of endogenous production of octanoate in the GOAT-expressing cells.
Moreover, the white adipose tissue can release fatty acids for GOAT to activate ghrelin, particularly during fasting. This situation is consistent with circulating ghrelin levels that increase during food deprivation. Long-term fasting can inhibit acylation but not the secretion of ghrelin. This situation is correlated with the ghrelin level that increases before meals and decreases after meals [32].
Inhibitors of GOAT can indirectly decrease ghrelin levels [33]. Specific GOAT inhibitors of GOAT can block an octanoyl attachment to ghrelin. GOAT is subjected to end-product inhibition [21]. There are two groups of GOAT inhibitors: ghrelin peptide-mimetic and small-molecule inhibitors (non-peptide-based GOAT inhibitors). An example of a ghrelin mimetic inhibitor is GO-CoA-Tat, a kind of peptide that antagonizes GOAT [30, 34]. GO-CoA-Tat attenuates AG production and prevents weight gain. In addition, GO-CoA-Tat can also increase glucose-induced insulin secretion. Therefore, inhibition of GOAT is an alternative strategy for treating obesity and related metabolic disorders [35]
Small-molecule GOAT inhibitors, like triterpenoid GOAT inhibitors, compound A and B. Synthetic triterpenoids are discovered and identified as CDDO (2-cyano-2,12-dioxoleane-1,9(11)-dien-28-oic acid). Compound A (2-[(2,4-dichlorobenzyl) sulfanyl]-1,3-benzoxazole-5-carboxylic acid) and compound B (4-chloro-6- -1-benzothiophen-3-yl) acetic acid) can be synthesized and inhibit GOAT. They show octanoyl-CoA competitive inhibitory activity and can decrease acyl ghrelin production [22].
Ghrelin is a potent food intake stimulator, leading to weight gain and adiposity. It can increase the risk of obesity and binge eating behavior. The functionality of ghrelin is due to its interaction with the GHS-R1a. Besides its ability to promote the reinforcement of hedonic food, it also acts at extra-hypothalamic sites, making interaction with dopaminergic, cannabinoid, opioid, and orexin signaling [36].
3.2. Growth hormone secretagogue receptor (GHS-R) (ghrelin receptor)
3.2.1. General characteristics of GHS-R
GHS-R belongs to the G-protein-coupled receptors (GPCRs) that mediate extracellular to intracellular signaling for various physiological functions. GPCRs form binding with orthosteric or allosteric ligands that modulate their activity [37]. GHS-R, as the ghrelin receptor, mediates various biological effects of ghrelin. Activation of GHS-R may trigger a diversity of signaling mechanisms and physiological responses. Information on the molecular structure of GHS-R, ligand-receptor interaction, and its intracellular signaling pathways is essential for understanding the interaction of XNT and GHS-R [38].
Two forms of ghrelin, AG and DAG, are primarily present in the plasma with GOAT. DAG has antagonist properties and can counteract the effects of AG. AG and DAG can influence the hypothalamic-pituitary-adrenal (HPA) axis and the corticosterone/cortisol level that drives the eating desire under stressful situations. DAG and inhibition of GOAT are good targets for reducing obesity and bingeing-related eating disorders. Furthermore, AG/DAG ratio is an essential biomarker for diagnosing maladaptive eating behaviors [36]. As a ligand of GHS-R, ghrelin is considered a short-term meal initiator and a long-term energy balance regulator. AG protein-coupled receptor is identified in the human pituitary and hypothalamus, stimulating the GH release from the anterior pituitary.
3.2.2. Signaling mechanism of GHS-R
There are two GHS-R transcripts, GHS-R1a, and GHS-R1b. GHS-R1a is the acyl ghrelin receptor that is expressed in the brain and other body areas. Multiple GHS-R1a agonists, antagonists, and inversed agonists are available [39]. GHS-R1a can be expressed in the hypothalamus's feeding or appetite-regulating center [24]. AG is a ligand for GHS-R1a, and acts on GHS-R1a to stimulate GH release. The GHS-R1a is essential in eating behavior and the pathogenetic mechanisms of drug addiction, obesity, and chronic alcohol consumption [40].
Octanoylated ghrelin (AG) is able to activate GHS-R1a, and is involved in multiple physiological processes, including stimulus of food intake, gastric exhausting, body energy balance, glucose homeostasis, reduced secretion of insulin, and lipogenesis. There are several GHS-R1a ligands. They are peptidyl and non-peptidyl ligands that act as GHS-R1a agonists, antagonists, or inverse agonists [41]. With their interaction, GHS-R1a mediates the pharmacological properties of ghrelin [42]. As a ligand of GHS-R, ghrelin may bind to GHS-R after its acylation or octanoylation on its serine-3-residue by GOAT. Therefore, the administration of ghrelin increases food intake and body weight. On the contrary, inhibiting its actions with GHS-R leads to decreased food intake and weight loss.
Ghrelin acts as an agonist at the ghrelin receptor because it modulates its maximum efficacy and potency [43, 44]. Ghrelin is a hunger hormone that can activate GHS-R, stimulate food intake and growth hormone secretion, and regulate reward signaling. Therefore, ghrelin can promote body weight gain and adipogenesis. Acylation of ghrelin at Ser3 is required for its agonistic action on GHS-R [45]. On the contrary, inhibition of the Ghrelin/GHS-R pathway can reduce food intake, body weight, and adiposity by reducing appetite, increasing energy expenditure, and fat catabolism [46].
An example of an antagonist of GHS-R is liver-expressed antimicrobial peptide-2 (LEAP-2). LEAP-2 is an endogenous non-competitive allosteric antagonist of GHS-R1a [47]. LEAP2 as an endogenous antagonist of GHS-R can inhibit the GHS-R activation by ghrelin and block the ghrelin’s effects, like stimulus in food intake, GH release, and maintenance of viable glucose levels during chronic caloric restriction [48]. LEAP-2 is recognized as an endogenous blocker of GHS-R1a. The activity of GHS-R1a is regulated by two counter-regulatory endogenous ligands, namely ghrelin (activation) and LEAP-2 (inhibition) [49]. LEAP-2 acts either as a competitive ghrelin antagonist or an inverse agonist of constitutive GHS-R1a activity. LEAP-2 can block ghrelin's effects on the stimulus of food intake and hormonal secretion. In circulation, LEAP-2 displays an inverse activity to ghrelin, then increases the stimulus of food intake and obesity (positive energy balance) and decreases upon fasting and weight loss (negative energy balance). Thus, the LEAP-2/ghrelin molar ratio varies depending on the energy status, and modulation of this ratio conversely influences energy intake [49].
3.3. Molecular interactions between xanthorrhizol either with GOAT or GHS-R
3.3.1. Ligand preparation
The canonical SMILES data of xanthorrhizol was obtained from PubChem, and then the 3D structure of XNT was created using Marvin Sketch software. Native ligands attached to the Ghrelin and GOAT models were separated using Discovery Studio 2021 software. The ligands used in this study were optimized using MOE 2019.0102 software.
3.3.2. Molecular interaction between ghrelin and desacyl ghrelin (DAG)
Molecular docking between ghrelin and octanoic acid; ghrelin and xanthorrhizol, GOAT protein; and XNT were performed using the PatchDock server. The clustering RMSD parameter was set as 4 Å, and the complex type was set as "protein-small ligand" for protein-small ligand docking and "default" for protein-protein docking. The best results for protein-protein docking [50] were refined using the FIREDock server for further analysis. A higher docking score may indicate less steric hindrance, and an ACE score may suggest a spontaneous reaction between protein and ligand [51].
Ghrelin protein sequences with access codes NP_001289751 were obtained by searching the NCBI database using RefSeq and Homo sapiens filter. Protein modeling of the sequence data in fasta format using the SWISS-MODEL server (https://swissmodel.expasy.org/) [52], and the modeling results from the SWISS-MODEL server is a ghrelin protein model with 100% similarity [53] to the protein bank database with access code 7f9y (https://www.rcsb.org/structure/7F9Y).
Docking analysis revealed that the molecular ligand interaction of XNT with DAG is not in the same site as octanoic acid (Fig. 4, Table 1). Octanoic acid attaches to Ser 2, but XNT attaches to Gln 9.
3.3.3. Molecular interaction between xanthorrhizol and GOAT
GOAT (ghrelin O-acyltransferase) protein sequences with access codes NP_001094386.1 were obtained by searching the NCBI database using RefSeq and Homo sapiens filter. Protein modeling of the sequence data in fasta format using the SWISS-MODEL server (https://swissmodel.expasy.org/), and the modeling results from the SWISS-MODEL server is a GOAT protein model with 100% similarity to the protein bank database with access code 7f3x (https://www.rcsb.org/structure/7F3X).
Table 1. Molecular docking prediction of Ghrelin with Octanoic Acid and Xanthorrhizol
No | Compound | Docking Score | Ligand Interaction | Type interaction | Distance |
1 | Octanoic Acid | 1982 | Arg 10 | H-acceptor | 3.23 |
Arg 10 | H-acceptor | 3.04 | |||
2 | Xanthorrhizol | 3002 | Gln 9 | H-donor | 3.11 |
Figure 4. Interaction of Ghrelin with Xanthorrhizol (left) and Ghrelin with Octanoic Acid (right)
The molecular interaction of XNT with GOAT (Fig. 6 and 7) is compared with the interaction of L-alpha-lysophosphatidylcholine (LAP) (Fig. 5). XNT can interact with Thr 143 of GOAT. This site does not have interaction with LAP (Table 2).
Figure 5. Ligand interaction of GOAT with LAP (above, left), GOAT with LAP siteview (above, right), GOAT dengan LAP ligand interaction (below, right)
3.3.4. Molecular interaction between xanthorrhizol and GHS-R
Xanthorrhizol is supposed to be a responsible enzyme for satiety modulation. However, it is not yet clear whether XNT is an agonist, antagonist, or inverse agonist of GHS-R. Octanoic acid binds with Gln120 and Arg 102 (Fig. 8, 9 and 10). XNT has binding with residues Asn 305 and Phe 312 (Fig. 11 and Table 3).
This work is licensed under the
Creative Commons Attribution
4.0
License (CC BY-NC 4.0).
Abstract
After
curcuminoids, xanthorrhizol is the second primary bioactive compound from
Curcuma xanthorrhiza. Traditionally, the rhizome of Curcuma xanthorriza is
well-known for its appetite stimulation. However, the mechanism of appetite
stimulation is still unclear, particularly its interaction with the
appetite-related ghrelin system. Therefore, understanding interactive molecular
modulations of xanthorrhizol with ghrelin, GOAT (ghrelin-O-acyl transferase),
and ghrelin receptor (GHS-R: growth hormone secretagogue receptor is essential.
Xanthorrhizol, an appetite stimulant, may interact with ghrelin, GOAT, and
GHS-R. Herein, this study aimed to do in silico analysis to hypothetically
predict the molecular interaction of xanthorrhizol with ghrelin, ghrelin-O-acyl
transferase (GOAT), and growth hormone secretagogue receptor (GHS-R). Docking
analysis was conducted to understand the interactive molecular patterns of
xanthorrhizol, ghrelin, GOAT, and GHS-R. The docking studies showed that the
molecular interaction of xanthorrhizol is with Arg10 of ghrelin and not with
Ser2, which is essential for the linkage of octanoic acid. The molecular
interaction of xanthorrhizol with GOAT is in the active sites of either
deacylated ghrelin or octanoic acid. Therefore, xanthorrhizol is a
competitive inhibitor of GOAT. It inhibits GOAT activity. Xanthorrhizol
interacts with GHS-R in its small cavity II. Itnis still unclear whether this
interaction is agonist or antagonist. This in silico analysis showed that
xanthorrhizol is probably not a stimulating appetite natural drug via
stimulating GHS-R signaling.
Abstract Keywords
Appetite stimulant, Curcuma
xanthorrhiza, enzyme modulation, hunger hormone, temulawak
This work is licensed under the
Creative Commons Attribution
4.0
License (CC BY-NC 4.0).
Editor-in-Chief
This work is licensed under the
Creative Commons Attribution 4.0
License.(CC BY-NC 4.0).